The 2006 Fuse box has different pins underneath than the 99-01 Explorers did, so having the explorer box didn't help much so I went to the junkyard and depinned some wires from a newer ranger fusebox and added them into two empty spots in the Rangers fuse box, this allow OEM fused inside the OEM box to power up the Alternator Charge wire and the Coilpack Power wire like it would be from the factory. (There are many open/empty fuse locations in the Ranger fuse box, but there are no wire/pins in those locations, so if you add the pins into you can then use the spaces for more active fuses)
I then removed a module from the Explorers fuse box housing which snapped into the empty back right corner of the Ranger box to add the ECU Power DIODE and wired it inline after the ECU power relay already in the box. (The 99-01 Explorers use a Diode (essentially a one way check valve) on the ECU and the 2006 ranger does not (maybe it has one built inside the ECU I'm not sure), most people never use the diode when swapping Expo 5.0s into other vehicles, but I had it and it was super easy to do so I decided to add it in for a layer of protection against any possible shorts from frying the ecu.