Check your driveshaft clearence.
on mine, I could only clock the rear case one hole before my driveshaft would hit the doubler. I have a c-v driveshaft, if you have a standard joint d/s you might be able to clock it two holes, but I don't see anyone getting more than that, there just isn't room.
I saw that about the fill/drain holes also, i had mine clocked, but put it back to normal for that reason, but on my supercab, normal position is just barely below the frame.
x2 on 4x4junkie's fill method - you'll definitely want to move the vent up. 'cept I used the 4x4 sensor hole to fill it from up top (in the cab) when I did mine 'cause it was a pain to do it from underneath. but I did what I heard others say which was to fill it 'till the fluid runs out where the original vent was. you gotta keep those gears dipped in oil since there's no oil pump in the doubler.
I've also heard that about the aerostar speedo cable.
Also, IMO you need some kind of rear mount for the back case to keep it from twisting the drivetrain. Some may say it's not important, but on other doubler setups I've seen, there is almost always some kind of mount in the back of the case. I've heard of people haveing to replace motor/tranny mounts after a doubler install. there is considerable twist/leverage on the drivetrain with a doubler.
Mine is a simple setup, which uses the mount for the balancer on the back of the case (the big round black thing), I even used the rubber bushing that's there between the black balancer things and I just made a tab onto my skid plate that I can bolt to the rear trans case. I can find a pic if you need to see it. Maybe it's not the strongest mount, but it will help keep the drivetrain from twisting.