Minor update:
Repaired the burnt section of harness, turns out that's the part that feeds the inputs to the CPU. Also replaced the ECA with the one from the junker's yard.
I talked with one of my contacts down at Advance Auto. This guy's pretty decent and knowledgeable with most stuff. Turns out he's driven a few of the BII's and Rangers with that transmission, and he stated flat out that each one has bogged a bit when put into over-drive-drive...but runs a bit more peppy when in just "Drive" alone. One such was a BII that had the problem to the point the other emp. would put it into "Drive" and upshift to overdrive when he hit 50mph.
Is that useful information? Who knows?
The computer and wiring repairs didn't do much

However I said heck with it, and removed (for about the 100th time) the upper intake. This time I was hell bent on pulling the injector rail and figuring out if this might be a fuel related issue, manifesting itself as more of a timing issue.
So the rail is pulled, and we did some tests. Just for an FYI!! DO NOT ATTEMPT WHAT I DID WITHOUT A HELPER AND A FIRE EXTING. THIS IS DANGEROUS!
Engine stone cold, ignition disabled. Rail sitting on top of the engine hooked up to the fuel lines. Hit the key to ONLY the on position to prime the fuel system. Used a small hook/scribe tool and a handful of paper towels and gently depressed each injectors "Pintle" valve (the tiny needle end that sticks out the end) System was primed after each test to ensure 40psi available.
4 injectors shot out a myst type fan spray. That's what I expected.
1 injector just kinda peed out at a moderate slow rate.
1 injector? Managed to get a bit 'wet' on the end, fully plugged.
Oddly enough? The peeing injector started seeping/leaking after the test. Figure something got into the valve and bunged it up.
Now I removed the wet one...and got a handful of gas and rust/crud out of the fuel rail for my efforts. The fuel sock which is visible on the 'in' part? Fully plugged solid with crud. I actually ripped the sock out of it, and it was packed like a small brick with gunk.
The wizzing injector that started to seep? That's on my desk now. It's also pretty caked with rust in the sock. I figure the other 4 are not far behind.
Now my wife asked me the magic question. Why would this create an issue only in closed loop, and not in open loop? My response?
In open loop, and just after starting the engine--the computer is working off very rich presets. The other 4 injectors are dumping in more fuel, due to the computer not being able to correctly read the O2 sensor. This could also explain why the idle after starting is a bit rougher then I'm used to.
Now when it goes into closed loop? The computer looks at all the sensors, and moves the injectors to fire in a more fuel managed method. With 2 of the 6 injectors not doing their job? The computer does not know that--and it's trying to manage the system. All the while with 2 cylinders getting to lean a mixture..
Now does any of that make sense??? Because I'm going to replace the blown apart injectors (Gotta admit...Yeah I'll take stuff apart LOL) And probably replace the fuel socks on the other 4 injectors that are still functional. There is nooooo way I can afford to replace all 6 injectors at this time. Little stinkers are very spendy on a tight budget. But I get the feeling this is going to clear up quite a bit of the problems.
If not? Back to the ol' drawing board------with a few more things checked off the list.
As for the gunk in the fuel rail? Gonna do it quick and nasty. With all 6 injectors off? Going to point the rail directly into a clean bucket...and nail the pump a couple of times. That 40lbs of fuel pressure should be enough to blast out the build up in the rail. And yeah...we will use extreme caution while doing so.
S-