Marking the nut, removing it and replacing a pinion seal, then reinstalling the nut is common practice. I guess the 16 Ford trained technicians I work with (myself included) are all wrong then? It can be done that way without any ill effects. Don't leave it loose, and don't overtighten it enough to crush the sleeve anymore and you will be fine.
hey man i wasn't saying this method doesn't work but it is NOT the proper way to do it.
im a full time auto tech too and i do it this way also because the service writers would shit bricks if i took the time to do it properly