This is a well known Ranger problem, even on the 2011 models. Mine does it too, during or just after rain, but the weatherstripping is in very good shape. Ford has a technical service bulletin on a fix that involves disassembling the door and replacing things—at your expense, of course. And it ain't cheap.
The shuddering is caused by the weatherstripping trying to grab the glass on the way down.
I use CRC silicon spray lube on the weatherstripping after lowering the window. You need to do this on both sides of the stripping in relation to the glass, and also on the front and rear of the window opening. No need to spray the stripping at the very top of the window opening, as the glass contacts that only when it's all the way up.
Don't go really crazy with the lube. When I used it last year, it took care of the shuddering for some time. I need to do it again, but it's been months since that first application.