Using shims is not the way to fix alignment issues. You can't tell me its the right thing to do, even if it was done in the past or is the way somebody else has done it.
There needs to be thread protusion period on the studs. If there is not, that is a safety concern.
The spindle is a tight fit for a reason. Messing with the mating surfaces is asking for it. It is the same issue as highsteer arms. The studs are not the only factor that accounts for the arm staying attached as one to the knuckle. It is also a matter of the clamping force against the FLAT mating surfaces, and the friction between the two surfaces that also holds everything together properly. If the studs in either scenario are subjected to loads and stresses that were not part of the design process then failure is what will result. The studs cannot take shear loads, that is not their design; their purpose is to keep the spindle tight against the knuckle.
If you are forced for whatever reason to use spindle spacers, then I suspect you may have way bigger issues than just getting it to align.
If this is a TTB rig you speak of, there are much better ways to fix it so it aligns properly, and most importantly, safely for you and the people on the road next to you.