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It would help to know what year truck you have as well as what "big side windows" you're talking about. For the door windows, you'll have to go to ford.seals for the big side windows have them any
can you even remove that rubber from the glass or is it glued on? I don't think you're gonna find new ones. Just gonna have to buy new glass probably.
the rubber is glued on and chances are that it cannot be removed without destroying it. the local glassmaster store said that you have to order the whole window from Ford and that is around $600.
i wonder if the supercab rear pop out windows for 94-98 are interchangeable? if so, find some at a junk yard with good rubber seals and swap them out.