@Eddo Rogue
You have a few options:
1) buy new (they don't need to be Ford OEM) rockers and pushrods and install them. May not be perfect but it will run:
• Sealed Power, Manley...
• the pushrods are a couple dollars less than the custom set as are the OEM rockers just a few dollars less than the reenforced sets.
2) buy new reenforced rockers and measure what size pushrods your engine needs, then purchase a custom set of pushrods to compliment your engine specific:
• hardened rockers from, Delta Camshaft of Tacoma Washington (the only place on Earth to buy them)
• custom length pushrods from Smith Brothers, about $150 plus S/H
3) custom adjustable pushrods, a few $ more than the custom set (also available from Smith Brothers) OR adjustable rockers, take a set of 2.9l rockers along with your 4.0l rocker arms and pedestals your machinists, 6 will require a little material milled from the rockers on one side. After that you have fully adjustable valve train!!
With reconditioned heads the valve seats may been redone (valve job) which may change the length of pushed required for appropriate hydraulic lifter preload; solution is to measure what length pushrods this build requires.