A big difference. You obviously haven't worked on the newer Explorers. Did you know that the rear springs are prone to cracking and breaking, just like Escorts in the 90s? Or that the lower control arm bushings like to dry up and rot prematurely? The parts are weaker and more expensive to service than a solid axle. The IRS in these things has far more problems than the solid axle.
If what you are saying is true--and I doubt it--it only reflects on Ford, not on the independent rear. We've had SUVs (not Fords) since 1999 with IRS and I can't think of a negative thing to say about them.
For what it's worth, my daily driver has a 7,500# capacity full float axle so it's not like I'm an IRS homer. I just hate people throwing blankets of hate over things (IRS in general, not those specific issues with Fords that you allege) without knowing what they are talking about. If you have references, please post them.