From what I understand, the PATS has a module near the steering column that picks up the key, and that PATS module communicates with the ECM directly. If the PATS module does not send the correct signal to the ECM that has the PATS programming inside it, the ECM will not let the engine start.
Thing of it is, if you are going to be installing a older ECM without the PATS, it doesn't care about the PATS signal, there is no wiring for it and no programming for it in the older system. So even if the PATS module says "don't start, something is not right" it is not communicating with anything that cares. You will be re-wiring and using the older computer system, so when it see's key-on power and the tach signals from the ignition system, it's ready to go.