Ok, I got it all figured out!
It wasnt that the two IAC's were different, I noticed while I had the IAC off, that the casting on the flange was slightly recessed. This was causing air to bypass the IAC completely and into the engine. I made a little spacer plate to go under the IAC and that fixed the problem.
The exhaust is a factory explorer Y-pipe (mine was cut at the JY about and inch from the manifolds, so I had to splice flanges in. Im sure a factory OHV Y would work) into 2.5 for about a foot, then a magnaflow 2.5 cat, and thrush welded flowmaster copy, and then 2.5 all the way out the back.
http://www.youtube.com/watch?v=bWtEVOWSkS8
Shitty vid, but thats all I had time for tonight.
The fuel rails have chrome 1/2" spacers from the hardware store to adapt to the taller injectors.
I took the bronco down to the car wash, and cleaned it up. The driveshaft doesnt vibrate at all. On the way back I was having some fun and I got onto the skinny pedal a little too hard and pulled the cable end right off, So I had to idle home in 2 low lol. Luckily I was only about a 1/2 mile from home.
This thing flat gets with it though! The only issue I dont like, is its still building power when the rev limiter kicks in (OHV vs. SOHC). Not much I can do about that though.